Implementation of Prototype for a Protein Motif Prediction and Update


The KIPS Transactions:PartD, Vol. 11, No. 4, pp. 845-854, Aug. 2004
10.3745/KIPSTD.2004.11.4.845,   PDF Download:

Abstract

Motif databases are used in the function and structure prediction of proteins. The frequency of use about these databases increases continuously because of protein sequence data growth. Recently, many researches about motif resource integration are proceeding. However, existing motif databases were developed independently, thus these databases have a heterogeneous search result problem. Database intnegration for this problem resolution has a periodic update problem, a complex query process problem, a duplicate database entry handling problem and XML support problem. Therefore, in this paper, we suppose a database resource integration method for these problem resolution, describe periodically integrated database update method and XML transformation. Finally, we estimate the implementation of our prototype and a case database.


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Cite this article
[IEEE Style]
G. Y. Noh, M. S. Kim, B. J. Lee, S. T. Lee, K. H. Ryu, "Implementation of Prototype for a Protein Motif Prediction and Update," The KIPS Transactions:PartD, vol. 11, no. 4, pp. 845-854, 2004. DOI: 10.3745/KIPSTD.2004.11.4.845.

[ACM Style]
Gi Young Noh, Muon Shik Kim, Bum Ju Lee, Sang Tae Lee, and Keun Ho Ryu. 2004. Implementation of Prototype for a Protein Motif Prediction and Update. The KIPS Transactions:PartD, 11, 4, (2004), 845-854. DOI: 10.3745/KIPSTD.2004.11.4.845.