Comparison and Analyzing System for Protein Tertiary Structure Database expands LOCK


KIPS Transactions on Software and Data Engineering, Vol. 12, No. 2, pp. 247-258, Feb. 2005
10.3745/KIPSTD.2005.12.2.247, Full Text:

Abstract

Protein structure is highly related to its function and comparing protein structure is very important to identify structural motif, family and their function. In this paper, we construct an integrated database system which has all the protein structure data and their literature. The structure queries from the web interface are compared with the target structures in database, and the results are shown to the user for future analysis. To constructs this system, we analyze the Flat-File of Protein Data Bank. Then we select the necessary structure data and store as a new formatted data. The literature data related to these structures are stored in a relational database to query the any kinds of data easily. In our structure comparison system, the structure of matched pattern and RMSD valure are calculated, then they are showed to the user with their relational documentation data. This system provides the more quick comparison and nice analyzing environment.


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Cite this article
[IEEE Style]
K. S. Jung, Y. Han, S. H. Park and K. H. Ryu, "Comparison and Analyzing System for Protein Tertiary Structure Database expands LOCK," KIPS Journal D (2001 ~ 2012) , vol. 12, no. 2, pp. 247-258, 2005. DOI: 10.3745/KIPSTD.2005.12.2.247.

[ACM Style]
Kwang Su Jung, Yu Han, Sung Hee Park, and Keun Ho Ryu. 2005. Comparison and Analyzing System for Protein Tertiary Structure Database expands LOCK. KIPS Journal D (2001 ~ 2012) , 12, 2, (2005), 247-258. DOI: 10.3745/KIPSTD.2005.12.2.247.