An Approach for Integrated Modeling of Protein Data using a Fact Constellation Schema and a Tree based XML Model


KIPS Transactions on Software and Data Engineering, Vol. 11, No. 3, pp. 519-532, Mar. 2004
10.3745/KIPSTD.2004.11.3.519, Full Text:

Abstract

With the explosion of bioinformatics data such proteins and genes, biologists need a integrated system to analyze and organize large datasets that interact with heterogeneous types of biological data. In this paper, we propose a integration system based on a mediated data warehouse architecture using a XML model in order to combine protein related data at biology laboratories. A fact constellation model in this system is used as a common model for integration and an integrated schema is translated to a XML schema. In addition, to track source changes and provenance of data in an integrated database employ incremental update and management of sequence version. This paper shows modeling of integration for protein structures, sequences and classification of structures using the proposed system.


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Cite this article
[IEEE Style]
S. H. Park, R. H. Li and K. H. Ryu, "An Approach for Integrated Modeling of Protein Data using a Fact Constellation Schema and a Tree based XML Model," KIPS Journal D (2001 ~ 2012) , vol. 11, no. 3, pp. 519-532, 2004. DOI: 10.3745/KIPSTD.2004.11.3.519.

[ACM Style]
Sung Hee Park, Rong Hua Li, and Keun Ho Ryu. 2004. An Approach for Integrated Modeling of Protein Data using a Fact Constellation Schema and a Tree based XML Model. KIPS Journal D (2001 ~ 2012) , 11, 3, (2004), 519-532. DOI: 10.3745/KIPSTD.2004.11.3.519.